HL_9WNR_068

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGGGGUCAUCCCGACUUACC

Length

20 nucleotides

Bulged bases

9WNR|1|b|C|885, 9WNR|1|b|C|888, 9WNR|1|b|C|890, 9WNR|1|b|U|895, 9WNR|1|b|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNR|1|b|G|879
9WNR|1|b|G|880
9WNR|1|b|G|881
9WNR|1|b|G|882
9WNR|1|b|G|883
9WNR|1|b|U|884
9WNR|1|b|C|885
9WNR|1|b|A|886
9WNR|1|b|U|887
9WNR|1|b|C|888
9WNR|1|b|C|889
9WNR|1|b|C|890
9WNR|1|b|G|891
9WNR|1|b|A|892
9WNR|1|b|C|893
9WNR|1|b|U|894
9WNR|1|b|U|895
9WNR|1|b|A|896
9WNR|1|b|C|897
9WNR|1|b|C|898

Current chains

Chain b

23S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain Z

Transfer RNA; tRNA