HL_9WNR_070

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_070 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1763

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9WNR|1|b|G|978
9WNR|1|b|A|979
9WNR|1|b|A|980
9WNR|1|b|A|981
9WNR|1|b|C|982
9WNR|1|b|A|983
9WNR|1|b|A|984
9WNR|1|b|C|985

Current chains

Chain b

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain r

Large ribosomal subunit protein bL20