HL_9WNR_074

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_074 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1508

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9WNR|1|b|U|1222
9WNR|1|b|G|1223
9WNR|1|b|U|1224
9WNR|1|b|G|1225
9WNR|1|b|A|1226
9WNR|1|b|G|1227

Current chains

Chain b

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein bL20

Chain s

50S ribosomal protein L21