HL_9WNR_080

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9WNR|1|b|C|1493, 9WNR|1|b|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_080 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.4648

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9WNR|1|b|G|1492
9WNR|1|b|C|1493
9WNR|1|b|A|1494
9WNR|1|b|A|1495
9WNR|1|b|A|1496
9WNR|1|b|U|1497
9WNR|1|b|C|1498

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2