HL_9WNR_083

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9WNR|1|b|A|1614, 9WNR|1|b|A|1616, 9WNR|1|b|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_083 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1456

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9WNR|1|b|C|1612
9WNR|1|b|G|1613
9WNR|1|b|A|1614
9WNR|1|b|C|1615
9WNR|1|b|A|1616
9WNR|1|b|C|1617
9WNR|1|b|A|1618
9WNR|1|b|G|1619

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L22

Chain z

eRAP-NC