HL_9WW4_006

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9WW4|1|AA|U|224, 9WW4|1|AA|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_006 not in the Motif Atlas

Geometric match to HL_8GLP_006

Geometric discrepancy: 0.0638

The information below is about HL_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9WW4|1|AA|C|222
9WW4|1|AA|G|223
9WW4|1|AA|U|224
9WW4|1|AA|G|225
9WW4|1|AA|G|226

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Aa

60S ribosomal protein L26