HL_9WW4_008

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9WW4|1|AA|G|294, 9WW4|1|AA|A|295, 9WW4|1|AA|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_008 not in the Motif Atlas

Homologous match to HL_8GLP_008

Geometric discrepancy: 0.1755

The information below is about HL_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9WW4|1|AA|C|289
9WW4|1|AA|U|290
9WW4|1|AA|U|291
9WW4|1|AA|G|292
9WW4|1|AA|G|293
9WW4|1|AA|G|294
9WW4|1|AA|A|295
9WW4|1|AA|A|296
9WW4|1|AA|U|297
9WW4|1|AA|G|298

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Ac

Large ribosomal subunit protein uL15

Chain Aq

60S ribosomal protein L36a