HL_9WW4_009

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

9WW4|1|AA|G|315, 9WW4|1|AA|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_009 not in the Motif Atlas

Homologous match to HL_8GLP_009

Geometric discrepancy: 0.0346

The information below is about HL_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00911.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9WW4|1|AA|G|314
9WW4|1|AA|G|315
9WW4|1|AA|U|316
9WW4|1|AA|A|317
9WW4|1|AA|A|318
9WW4|1|AA|A|319
9WW4|1|AA|C|320
9WW4|1|AA|U|321
9WW4|1|AA|C|322
9WW4|1|AA|C|323

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Ac

Large ribosomal subunit protein uL15

Chain Ak

60S ribosomal protein L36

Chain Aq

60S ribosomal protein L36a