HL_9WW4_014

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

9WW4|1|AA|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_014 not in the Motif Atlas

Homologous match to HL_9SUM_015

Geometric discrepancy: 0.046

The information below is about HL_9SUM_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9WW4|1|AA|U|1317
9WW4|1|AA|C|1318
9WW4|1|AA|U|1319
9WW4|1|AA|U|1320
9WW4|1|AA|G|1321
9WW4|1|AA|1MA|1322
9WW4|1|AA|A2M|1323
9WW4|1|AA|A|1324
9WW4|1|AA|C|1325
9WW4|1|AA|A2M|1326

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain Ac

Large ribosomal subunit protein uL15

Chain Ag

60S ribosomal protein L32