HL_9WW4_021

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9WW4|1|AA|U|1596, 9WW4|1|AA|A|1600, 9WW4|1|AA|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_021 not in the Motif Atlas

Homologous match to HL_8GLP_023

Geometric discrepancy: 0.0403

The information below is about HL_8GLP_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.4

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

13

Unit IDs

9WW4|1|AA|A|1593
9WW4|1|AA|C|1594
9WW4|1|AA|G|1595
9WW4|1|AA|U|1596
9WW4|1|AA|G|1597
9WW4|1|AA|C|1598
9WW4|1|AA|A|1599
9WW4|1|AA|A|1600
9WW4|1|AA|A|1601
9WW4|1|AA|U|1602

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AR

60S ribosomal protein L17

Chain Al

60S ribosomal protein L37