HL_9WW4_025

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9WW4|1|AA|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_025 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.3979

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9WW4|1|AA|C|1816
9WW4|1|AA|U|1817
9WW4|1|AA|G|1818
9WW4|1|AA|G|1819
9WW4|1|AA|C|1820
9WW4|1|AA|G|1821
9WW4|1|AA|U|1822
9WW4|1|AA|G|1823

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AG

Large ribosomal subunit protein uL18

Chain AV

60S ribosomal protein L21

Chain Ad

60S ribosomal protein L29