HL_9WW4_028

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

70 nucleotides

Bulged bases

9WW4|1|AA|A|1960, 9WW4|1|AA|C|1971, 9WW4|1|AA|G|1975, 9WW4|1|AA|A|1984, 9WW4|1|AA|U|1986, 9WW4|1|AA|G|1988, 9WW4|1|AA|G|1989, 9WW4|1|AA|A|1990, 9WW4|1|AA|A|1991, 9WW4|1|AA|U|1992, 9WW4|1|AA|G|1995, 9WW4|1|AA|U|1997, 9WW4|1|AA|U|2004, 9WW4|1|AA|U|2006, 9WW4|1|AA|G|2007, 9WW4|1|AA|U|2008, 9WW4|1|AA|A|2009, 9WW4|1|AA|C|2011, 9WW4|1|AA|A|2013, 9WW4|1|AA|U|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|AA|U|1957
9WW4|1|AA|A|1958
9WW4|1|AA|U|1959
9WW4|1|AA|A|1960
9WW4|1|AA|G|1961
9WW4|1|AA|A|1962
9WW4|1|AA|C|1963
9WW4|1|AA|A|1964
9WW4|1|AA|G|1965
9WW4|1|AA|C|1966
9WW4|1|AA|A|1967
9WW4|1|AA|G|1968
9WW4|1|AA|G|1969
9WW4|1|AA|A|1970
9WW4|1|AA|C|1971
9WW4|1|AA|G|1972
9WW4|1|AA|G|1973
9WW4|1|AA|U|1974
9WW4|1|AA|G|1975
9WW4|1|AA|G|1976
9WW4|1|AA|C|1977
9WW4|1|AA|C|1978
9WW4|1|AA|A|1979
9WW4|1|AA|U|1980
9WW4|1|AA|G|1981
9WW4|1|AA|G|1982
9WW4|1|AA|A|1983
9WW4|1|AA|A|1984
9WW4|1|AA|G|1985
9WW4|1|AA|U|1986
9WW4|1|AA|C|1987
9WW4|1|AA|G|1988
9WW4|1|AA|G|1989
9WW4|1|AA|A|1990
9WW4|1|AA|A|1991
9WW4|1|AA|U|1992
9WW4|1|AA|C|1993
9WW4|1|AA|C|1994
9WW4|1|AA|G|1995
9WW4|1|AA|C|1996
9WW4|1|AA|U|1997
9WW4|1|AA|A|1998
9WW4|1|AA|A|1999
9WW4|1|AA|G|2000
9WW4|1|AA|G|2001
9WW4|1|AA|A|2002
9WW4|1|AA|G|2003
9WW4|1|AA|U|2004
9WW4|1|AA|G|2005
9WW4|1|AA|U|2006
9WW4|1|AA|G|2007
9WW4|1|AA|U|2008
9WW4|1|AA|A|2009
9WW4|1|AA|A|2010
9WW4|1|AA|C|2011
9WW4|1|AA|A|2012
9WW4|1|AA|A|2013
9WW4|1|AA|C|2014
9WW4|1|AA|U|2015
9WW4|1|AA|C|2016
9WW4|1|AA|A|2017
9WW4|1|AA|C|2018
9WW4|1|AA|C|2019
9WW4|1|AA|U|2020
9WW4|1|AA|G|2021
9WW4|1|AA|C|2022
9WW4|1|AA|C|2023
9WW4|1|AA|G|2024
9WW4|1|AA|A|2025
9WW4|1|AA|A|2026

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AK

60S ribosomal protein L9

Chain AU

60S ribosomal protein L18a

Chain Ao

Ubiquitin-60S ribosomal protein L40