HL_9WW4_031

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_031 not in the Motif Atlas

Homologous match to HL_8GLP_033

Geometric discrepancy: 0.0721

The information below is about HL_8GLP_033

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9WW4|1|AA|A|2376
9WW4|1|AA|C|2377
9WW4|1|AA|G|2378
9WW4|1|AA|A|2379
9WW4|1|AA|G|2380
9WW4|1|AA|A|2381
9WW4|1|AA|A|2382
9WW4|1|AA|C|2383
9WW4|1|AA|U|2384

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AR

60S ribosomal protein L17

Chain AT

60S ribosomal protein L19

Chain Af

60S ribosomal protein L31