HL_9WW4_038

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9WW4|1|AA|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_038 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.1916

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9WW4|1|AA|G|2624
9WW4|1|AA|U|2625
9WW4|1|AA|U|2626
9WW4|1|AA|C|2627
9WW4|1|AA|U|2628
9WW4|1|AA|C|2629
9WW4|1|AA|U|2630
9WW4|1|AA|U|2631
9WW4|1|AA|PSU|2632

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AW

60S ribosomal protein L22