HL_9WW4_046

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

9WW4|1|AA|A|3642, 9WW4|1|AA|A|3643, 9WW4|1|AA|U|3644, 9WW4|1|AA|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_046 not in the Motif Atlas

Homologous match to HL_9H3G_049

Geometric discrepancy: 0.0618

The information below is about HL_9H3G_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.4

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

11

Unit IDs

9WW4|1|AA|PSU|3639
9WW4|1|AA|U|3640
9WW4|1|AA|U|3641
9WW4|1|AA|A|3642
9WW4|1|AA|A|3643
9WW4|1|AA|U|3644
9WW4|1|AA|U|3645
9WW4|1|AA|A|3646
9WW4|1|AA|A|3647
9WW4|1|AA|A|3648
9WW4|1|AA|A|3649

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain Al

60S ribosomal protein L37