HL_9WW4_057

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_057 not in the Motif Atlas

Homologous match to HL_8GLP_062

Geometric discrepancy: 0.0527

The information below is about HL_8GLP_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

33

Unit IDs

9WW4|1|AA|C|4270
9WW4|1|AA|A|4271
9WW4|1|AA|G|4272
9WW4|1|AA|A|4273
9WW4|1|AA|A|4274
9WW4|1|AA|G|4275
9WW4|1|AA|G|4276
9WW4|1|AA|G|4277

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AL

Ribosomal protein uL16-like

Chain AV

60S ribosomal protein L21

Chain Aq

60S ribosomal protein L36a