HL_9WW4_059

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_059 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.0471

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9WW4|1|AA|U|4321
9WW4|1|AA|G|4322
9WW4|1|AA|A|4323
9WW4|1|AA|A|4324
9WW4|1|AA|A|4325
9WW4|1|AA|G|4326

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AG

Large ribosomal subunit protein uL18

Chain AV

60S ribosomal protein L21

Chain Aq

60S ribosomal protein L36a