HL_9WW4_063

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_063 not in the Motif Atlas

Homologous match to HL_9SUM_056

Geometric discrepancy: 0.0643

The information below is about HL_9SUM_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9WW4|1|AA|U|4497
9WW4|1|AA|OMU|4498
9WW4|1|AA|OMG|4499
9WW4|1|AA|PSU|4500
9WW4|1|AA|U|4501
9WW4|1|AA|C|4502
9WW4|1|AA|A|4503

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3