HL_9WW4_069

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9WW4|1|AA|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_069 not in the Motif Atlas

Homologous match to HL_8GLP_075

Geometric discrepancy: 0.0491

The information below is about HL_8GLP_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.4

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9WW4|1|AA|G|4975
9WW4|1|AA|U|4976
9WW4|1|AA|A|4977
9WW4|1|AA|G|4978
9WW4|1|AA|A|4979
9WW4|1|AA|C|4980
9WW4|1|AA|G|4981
9WW4|1|AA|A|4982
9WW4|1|AA|C|4983

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AR

60S ribosomal protein L17

Chain Af

60S ribosomal protein L31