HL_9WW4_075
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9WW4|1|AC|A|82, 9WW4|1|AC|A|84, 9WW4|1|AC|U|85, 9WW4|1|AC|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WW4_075 not in the Motif Atlas
- Homologous match to HL_9H3G_002
- Geometric discrepancy: 0.4222
- The information below is about HL_9H3G_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AC|G|68
9WW4|1|AC|PSU|69
9WW4|1|AC|G|70
9WW4|1|AC|A|71
9WW4|1|AC|A|72
9WW4|1|AC|U|73
9WW4|1|AC|U|74
9WW4|1|AC|OMG|75
9WW4|1|AC|C|76
9WW4|1|AC|A|77
9WW4|1|AC|G|78
9WW4|1|AC|G|79
9WW4|1|AC|A|80
9WW4|1|AC|C|81
9WW4|1|AC|A|82
9WW4|1|AC|C|83
9WW4|1|AC|A|84
9WW4|1|AC|U|85
9WW4|1|AC|U|86
9WW4|1|AC|G|87
9WW4|1|AC|A|88
9WW4|1|AC|U|89
9WW4|1|AC|C|90
Current chains
- Chain AC
- 5.8S rRNA (156-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- 60S ribosomal protein L26
- Chain Aj
- 60S ribosomal protein L35
- Chain Al
- 60S ribosomal protein L37
- Chain An
- 60S ribosomal protein L39
Coloring options: