HL_9WW4_078

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_078 not in the Motif Atlas

Homologous match to HL_9H3G_079

Geometric discrepancy: 0.0627

The information below is about HL_9H3G_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.4

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|G|7
9WW4|1|BA|U|8
9WW4|1|BA|U|9
9WW4|1|BA|G|10
9WW4|1|BA|A|11
9WW4|1|BA|U|12
9WW4|1|BA|C|13
9WW4|1|BA|C|14
9WW4|1|BA|U|15
9WW4|1|BA|G|16
9WW4|1|BA|C|17

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BQ

40S ribosomal protein S23

Chain BV

40S ribosomal protein S2