HL_9WW4_080

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9WW4|1|BA|U|160, 9WW4|1|BA|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_080 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.1443

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9WW4|1|BA|G|156
9WW4|1|BA|U|157
9WW4|1|BA|A|158
9WW4|1|BA|A2M|159
9WW4|1|BA|U|160
9WW4|1|BA|U|161
9WW4|1|BA|C|162

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BW

40S ribosomal protein S6

Chain Bc

40S ribosomal protein S24