HL_9WW4_081

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

9WW4|1|BA|U|198, 9WW4|1|BA|C|199, 9WW4|1|BA|G|200, 9WW4|1|BA|C|201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_081 not in the Motif Atlas

Homologous match to HL_9H3G_082

Geometric discrepancy: 0.5744

The information below is about HL_9H3G_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|BA|C|195
9WW4|1|BA|C|196
9WW4|1|BA|U|197
9WW4|1|BA|U|198
9WW4|1|BA|C|199
9WW4|1|BA|G|200
9WW4|1|BA|C|201
9WW4|1|BA|G|202
9WW4|1|BA|G|203
9WW4|1|BA|G|204

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BH

40S ribosomal protein S8