HL_9WW4_087

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

9WW4|1|BA|A|464

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_087 not in the Motif Atlas

Homologous match to HL_9SUM_081

Geometric discrepancy: 0.0957

The information below is about HL_9SUM_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9WW4|1|BA|OMC|462
9WW4|1|BA|C|463
9WW4|1|BA|A|464
9WW4|1|BA|A|465
9WW4|1|BA|G|466
9WW4|1|BA|G|467

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AX

60S ribosomal protein L23

Chain BW

40S ribosomal protein S6