HL_9WW4_093

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

9WW4|1|BA|G|836, 9WW4|1|BA|G|838, 9WW4|1|BA|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_093 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.5193

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

9WW4|1|BA|C|833
9WW4|1|BA|C|834
9WW4|1|BA|C|835
9WW4|1|BA|G|836
9WW4|1|BA|A|837
9WW4|1|BA|G|838
9WW4|1|BA|C|839
9WW4|1|BA|C|840
9WW4|1|BA|G|841

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24