HL_9WW4_104

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

9WW4|1|BA|U|1371

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_104 not in the Motif Atlas

Homologous match to HL_9PN5_104

Geometric discrepancy: 0.1214

The information below is about HL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9WW4|1|BA|G|1366
9WW4|1|BA|PSU|1367
9WW4|1|BA|U|1368
9WW4|1|BA|A|1369
9WW4|1|BA|A|1370
9WW4|1|BA|U|1371
9WW4|1|BA|U|1372
9WW4|1|BA|C|1373

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain Bh

40S ribosomal protein S17