HL_9WW4_105

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9WW4|1|BA|C|1419, 9WW4|1|BA|G|1420, 9WW4|1|BA|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_105 not in the Motif Atlas

Homologous match to HL_9H3G_103

Geometric discrepancy: 0.4568

The information below is about HL_9H3G_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9WW4|1|BA|C|1416
9WW4|1|BA|C|1417
9WW4|1|BA|C|1418
9WW4|1|BA|C|1419
9WW4|1|BA|G|1420
9WW4|1|BA|A|1421
9WW4|1|BA|G|1422
9WW4|1|BA|C|1423
9WW4|1|BA|G|1424

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BN

Small ribosomal subunit protein eS19