HL_9WW4_106

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_106 not in the Motif Atlas

Geometric match to HL_8GLP_113

Geometric discrepancy: 0.1188

The information below is about HL_8GLP_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.5

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9WW4|1|BA|C|1460
9WW4|1|BA|G|1461
9WW4|1|BA|U|1462
9WW4|1|BA|U|1463
9WW4|1|BA|C|1464
9WW4|1|BA|A|1465
9WW4|1|BA|G|1466

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BU

Receptor of activated protein C kinase 1

Chain Bh

40S ribosomal protein S17