3D structure

PDB id
9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human 80S ribosome delta eL41 non-rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
9WW6|1|AA|G|4475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9WW6|1|AA|A|4474
9WW6|1|AA|G|4475
9WW6|1|AA|C|4476
9WW6|1|AA|A|4477
9WW6|1|AA|G|4478
9WW6|1|AA|A|4479
9WW6|1|AA|A|4480
9WW6|1|AA|U|4481

Current chains

Chain AA
28S rRNA (3773-MER)

Nearby chains

Chain AK
60S ribosomal protein L9
Chain Ao
Ubiquitin-60S ribosomal protein L40

Coloring options:

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