HL_9XFK_016

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9XFK|1|I|U|546, 9XFK|1|I|A|547, 9XFK|1|I|G|548, 9XFK|1|I|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|G|543
9XFK|1|I|C|544
9XFK|1|I|U|545
9XFK|1|I|U|546
9XFK|1|I|A|547
9XFK|1|I|G|548
9XFK|1|I|G|549
9XFK|1|I|C|550

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain Z

50S ribosomal protein L21