HL_9XFK_023

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9XFK|1|I|A|781, 9XFK|1|I|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_023 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.0457

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9XFK|1|I|U|779
9XFK|1|I|G|780
9XFK|1|I|A|781
9XFK|1|I|A|782
9XFK|1|I|A|783
9XFK|1|I|G|784
9XFK|1|I|G|785

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2