HL_9XFK_025

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9XFK|1|I|U|958, 9XFK|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.212

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9XFK|1|I|PSU|955
9XFK|1|I|G|956
9XFK|1|I|C|957
9XFK|1|I|U|958
9XFK|1|I|A|959
9XFK|1|I|A|960
9XFK|1|I|C|961
9XFK|1|I|G|962

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

Large ribosomal subunit protein uL16