HL_9XFK_028

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_028 not in the Motif Atlas

Homologous match to HL_1MMS_004

Geometric discrepancy: 0.4592

The information below is about HL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9XFK|1|I|C|1092
9XFK|1|I|G|1093
9XFK|1|I|U|1094
9XFK|1|I|A|1095
9XFK|1|I|A|1096
9XFK|1|I|U|1097
9XFK|1|I|A|1098
9XFK|1|I|G|1099

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain Q

50S ribosomal protein L11

Chain m

50S ribosomal protein L36