HL_9XFK_056

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_056 not in the Motif Atlas

Geometric match to HL_8B0X_084

Geometric discrepancy: 0.0646

The information below is about HL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9XFK|1|I|U|2356
9XFK|1|I|G|2357
9XFK|1|I|A|2358
9XFK|1|I|C|2359
9XFK|1|I|G|2360
9XFK|1|I|G|2361

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain e

50S ribosomal protein L27

Chain l

50S ribosomal protein L35