HL_9XFK_067

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9XFK|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFK_067 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1776

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9XFK|1|I|G|2819
9XFK|1|I|A|2820
9XFK|1|I|A|2821
9XFK|1|I|G|2822
9XFK|1|I|A|2823
9XFK|1|I|C|2824
9XFK|1|I|G|2825
9XFK|1|I|A|2826
9XFK|1|I|C|2827

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain V

Large ribosomal subunit protein bL17