HL_9XFL_026

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_026 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1974

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9XFL|1|I|G|978
9XFL|1|I|A|979
9XFL|1|I|A|980
9XFL|1|I|A|981
9XFL|1|I|C|982
9XFL|1|I|A|983
9XFL|1|I|A|984
9XFL|1|I|C|985

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain Z

50S ribosomal protein L21

Chain h

50S ribosomal protein L30