HL_9XFL_052

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9XFL|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0926

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9XFL|1|I|C|2248
9XFL|1|I|U|2249
9XFL|1|I|G|2250
9XFL|1|I|OMG|2251
9XFL|1|I|G|2252
9XFL|1|I|G|2253
9XFL|1|I|C|2254
9XFL|1|I|G|2255
9XFL|1|I|G|2256

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16

Chain e

50S ribosomal protein L27