HL_9XFL_054

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_054 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.2017

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9XFL|1|I|G|2304
9XFL|1|I|U|2305
9XFL|1|I|C|2306
9XFL|1|I|G|2307
9XFL|1|I|G|2308
9XFL|1|I|A|2309
9XFL|1|I|C|2310
9XFL|1|I|A|2311
9XFL|1|I|U|2312

Current chains

Chain I

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L5