HL_9XFL_070

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

9XFL|1|J|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XFL_070 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.2586

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9XFL|1|J|C|38
9XFL|1|J|A|39
9XFL|1|J|U|40
9XFL|1|J|G|41
9XFL|1|J|C|42
9XFL|1|J|C|43
9XFL|1|J|G|44

Current chains

Chain J

5S rRNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain N

50S ribosomal protein L5

Chain W

50S ribosomal protein L18