HL_9XTD_006

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9XTD|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTD_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.26

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9XTD|1|A|G|259
9XTD|1|A|G|260
9XTD|1|A|U|261
9XTD|1|A|A|262
9XTD|1|A|A|263
9XTD|1|A|C|264
9XTD|1|A|G|265
9XTD|1|A|G|266
9XTD|1|A|C|267

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20