HL_9XTD_008

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTD_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1381

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9XTD|1|A|A|320
9XTD|1|A|A|321
9XTD|1|A|C|322
9XTD|1|A|U|323
9XTD|1|A|G|324
9XTD|1|A|A|325
9XTD|1|A|G|326
9XTD|1|A|A|327
9XTD|1|A|C|328
9XTD|1|A|A|329
9XTD|1|A|C|330
9XTD|1|A|G|331
9XTD|1|A|G|332
9XTD|1|A|U|333

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20