HL_9XTD_016

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTD_016 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.1836

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9XTD|1|A|C|726
9XTD|1|A|G|727
9XTD|1|A|A|728
9XTD|1|A|A|729
9XTD|1|A|G|730
9XTD|1|A|G|731

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain O

Small ribosomal subunit protein uS15