HL_9XWO_001
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUU(CM0)GCACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: CM0
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_001 not in the Motif Atlas
- Homologous match to HL_9J4O_001
- Geometric discrepancy: 0.3417
- The information below is about HL_9J4O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9XWO|1|5|C|31
9XWO|1|5|U|32
9XWO|1|5|U|33
9XWO|1|5|CM0|34
9XWO|1|5|G|35
9XWO|1|5|C|36
9XWO|1|5|A|37
9XWO|1|5|C|38
9XWO|1|5|G|39
Current chains
- Chain 5
- E-site tRNA (tRNAAla)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- 30S ribosomal protein S7
- Chain K
- 30S ribosomal protein S11
- Chain X
- SecM mRNA
- Chain Z
- Transfer RNA; tRNA
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