HL_9XWO_002
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_002 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1765
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9XWO|1|5|G|53
9XWO|1|5|5MU|54
9XWO|1|5|PSU|55
9XWO|1|5|C|56
9XWO|1|5|G|57
9XWO|1|5|A|58
9XWO|1|5|U|59
9XWO|1|5|C|60
9XWO|1|5|C|61
Current chains
- Chain 5
- E-site tRNA (tRNAAla)
Nearby chains
- Chain 7
- Large ribosomal subunit protein uL1
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: