HL_9XWO_006

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

9XWO|1|A|U|209, 9XWO|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_006 not in the Motif Atlas

Geometric match to HL_9E6Q_011

Geometric discrepancy: 0.1283

The information below is about HL_9E6Q_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9XWO|1|A|C|207
9XWO|1|A|U|208
9XWO|1|A|U|209
9XWO|1|A|C|210
9XWO|1|A|G|211

Current chains

Chain A

16S rRNA

Nearby chains