HL_9XWO_034
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CAGCUUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9XWO|1|Y|G|19, 9XWO|1|Y|G|20, 9XWO|1|Y|H2U|21, 9XWO|1|Y|A|22
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_034 not in the Motif Atlas
- Homologous match to HL_3KFU_004
- Geometric discrepancy: 0.1353
- The information below is about HL_3KFU_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XWO|1|Y|C|13
9XWO|1|Y|A|14
9XWO|1|Y|G|15
9XWO|1|Y|C|16
9XWO|1|Y|U|17
9XWO|1|Y|U|18
9XWO|1|Y|G|19
9XWO|1|Y|G|20
9XWO|1|Y|H2U|21
9XWO|1|Y|A|22
9XWO|1|Y|G|23
Current chains
- Chain Y
- A-site tRNA (prolyl-tRNAPro)
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: