HL_9XWO_035
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUUUGG(1MG)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_035 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1419
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9XWO|1|Y|G|32
9XWO|1|Y|U|33
9XWO|1|Y|U|34
9XWO|1|Y|U|35
9XWO|1|Y|G|36
9XWO|1|Y|G|37
9XWO|1|Y|1MG|38
9XWO|1|Y|A|39
9XWO|1|Y|C|40
Current chains
- Chain Y
- A-site tRNA (prolyl-tRNAPro)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- SecM mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: