HL_9XWO_039
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- G(5MU)(PSU)CGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_039 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.0624
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9XWO|1|Z|G|53
9XWO|1|Z|5MU|54
9XWO|1|Z|PSU|55
9XWO|1|Z|C|56
9XWO|1|Z|G|57
9XWO|1|Z|A|58
9XWO|1|Z|G|59
9XWO|1|Z|U|60
9XWO|1|Z|C|61
Current chains
- Chain Z
- P-site tRNA (tRNAGly)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- 50S ribosomal protein L16
Coloring options: