HL_9XWO_040

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

9XWO|1|a|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_040 not in the Motif Atlas

Geometric match to HL_8B0X_033

Geometric discrepancy: 0.0881

The information below is about HL_8B0X_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9XWO|1|a|U|59
9XWO|1|a|G|60
9XWO|1|a|C|61
9XWO|1|a|U|62
9XWO|1|a|A|63
9XWO|1|a|A|64
9XWO|1|a|U|65
9XWO|1|a|C|66
9XWO|1|a|U|67
9XWO|1|a|G|68

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23

Chain x

Large ribosomal subunit protein uL29