HL_9XWO_071

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9XWO|1|a|U|1396, 9XWO|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_071 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3356

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9XWO|1|a|G|1389
9XWO|1|a|U|1390
9XWO|1|a|U|1391
9XWO|1|a|A|1392
9XWO|1|a|A|1393
9XWO|1|a|U|1394
9XWO|1|a|A|1395
9XWO|1|a|U|1396
9XWO|1|a|U|1397
9XWO|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23